PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027713
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 347aa    MW: 39126.1 Da    PI: 5.803
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027713genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.56.6e-29125184258
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                  +Dgy+WrKYGqK++ g+++prsYYrCt++    C ++k+v+rs++dp+++eitY+g+H++
  DCAR_027713 125 EDGYSWRKYGQKDILGATHPRSYYRCTYRntqMCYATKQVQRSDNDPTIFEITYKGKHTC 184
                  8***************************98889*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.343119182IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-27121185IPR003657WRKY domain
SuperFamilySSF1182909.29E-25124184IPR003657WRKY domain
SMARTSM007741.4E-39124186IPR003657WRKY domain
PfamPF031061.8E-26125184IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGSACNWEKS TIANELIQGM EVARQLKFHL SSSTSSPDTH QRLLQRILSS YDNALLLLNW  60
SESSAVQAQA VPAMVSLPQS PISTEGSPGE FKDHHQDVSK KRKALPTWKD HVRIYFENGV  120
ESSAEDGYSW RKYGQKDILG ATHPRSYYRC TYRNTQMCYA TKQVQRSDND PTIFEITYKG  180
KHTCLQANNS VPPATPENQE LKHESHYHYH HHNQEPTNDV LINFRENLRV ETEDLHKKEA  240
SDSFSFPQGI ENLTGEAQLS SFSQLVNENV MGNFSPSFIS PATSGSSYFS VSPYQMNSFG  300
QFPESDHNEI ISANTSTSNS PILDLDFQID HADLDLKFPF DTPGFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-13118182672Probable WRKY transcription factor 4
2lex_A6e-13118182672Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022522.11e-116PREDICTED: probable WRKY transcription factor 41
TrEMBLB9RCQ71e-115B9RCQ7_RICCO; Putative uncharacterized protein
STRINGPOPTR_0003s13840.11e-115(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.14e-63WRKY family protein